Basic Information
VIS ID
TVIS20004694
Fusion event
HPV-OR1M1 integration
Validated
No
Detection method
RNA-Seq
Data source
download(HPVbase)
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E6
Start
106
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
9113164/9002488 (Hg38)
End
9113164/9002488 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
OR1M1
Nearest miRNA
hsa-mir-1227/Upstream/613108; hsa-let-7e/Downstream/1035866;
Nearest TSS
ENST00000633603/Upstream/21146; ENST00000429566/Downstream/84573;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/170044, chr19-CpG: 18/Downstream/91082
Upstream sequence
actccaggccgggcaacagaaagggaccccatctctaaGCAtacacttgatcttagccaaaaggccgagaagcaatGcccatctctaaaaataaaaaaca
Downstream sequence
GGCAGAGACCCTACTCACTTCCTGTggttcctcaaaaaattaaaaatagaactatgagccgggcacggtggcttacacctgtaatcccagcactttggga
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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