SERPINB3 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004702
Fusion event
HPV-SERPINB3 integration
Validated
No
Detection method
RNA-Seq
Data source
download(HPVbase)
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E1
Start
903
Host Sequence
Chromosome
chr18
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
61317170/63649936 (Hg38)
End
61317170/63649936 (Hg38)
Location type
Intronic
Target gene
SERPINB3
miRNAs that regulate target gene
hsa-mir-6807-5p ; hsa-mir-556-5p ; hsa-mir-3123 ; hsa-mir-4517
Nearest miRNA
hsa-mir-1-2/Upstream/5198778; hsa-mir-5011/Downstream/3431648;
Nearest TSS
ENST00000575820/Upstream/2357; ENST00000613567/Downstream/11948;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/226812, chr18-CpG: 63/Downstream/286230
Upstream sequence
ACAAACAGACATATCACGCAGGCTGACTCAGAAATGCCAACTGGAGATTCCGGCAGTCCACACTGGGGTGGGCCAGCCACCAATCACAGAGGTGTGGCCA
Downstream sequence
aattagcatatccattacctcatataattattcttttttagaaccagaacattaaaatttcctctctcagcaattttcaagtatacaatattggtattaa
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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