hsa-mir-21-5p _CESC.png
TP63 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004715
Fusion event
HPV-TP63 integration
Validated
No
Detection method
RNA-Seq
Data source
download(HPVbase)
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E7
Start
578
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
189239853/189522064 (Hg38)
End
189239853/189522064 (Hg38)
Location type
Intronic
Target gene
TP63
miRNAs that regulate target gene
hsa-mir-203a-3p ; hsa-mir-92a-3p ; hsa-mir-21-5p ; hsa-mir-124-3p ; hsa-mir-301b-3p ; hsa-mir-129-5p ; hsa-mir-6885-3p ; hsa-mir-4477b ; hsa-mir-1178-3p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4428
Nearest miRNA
hsa-let-7g/Upstream/833198; hsa-mir-3137/Downstream/307858;
Nearest TSS
ENST00000440867/Upstream/212170; ENST00000486398/Downstream/109352;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/574301, chr3-CpG: 99/Downstream/598227
Nearest cancer related gene
TP63(OG, No orient, 0)
Upstream sequence
AGGGTGTCTTGGGAGCCCGGCTGGCCTCCGCGGCCGGCGTCCCCTGCCTCCACCCTGTGCCCGAGGGGGTGTCCGGTCCTGCCCATCCGATACTCTGGTG
Downstream sequence
gaagaattaatttctccattcattaattaatgtatccattctagtgataaaaatttaaaattgtttttgaaatggataaaaatgaaaacacaacatacca
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
Curate