ZBTB7C _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004716
Fusion event
HPV-ZBTB7C integration
Validated
No
Detection method
RNA-Seq
Data source
download(HPVbase)
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23740984
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E6
Start
139
Host Sequence
Chromosome
chr18
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
45567460/48041089 (Hg38)
End
45567460/48041089 (Hg38)
Location type
Intronic
Target gene
ZBTB7C
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-106b-3p ; hsa-mir-1228-3p ; hsa-mir-8485 ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-510-5p
Nearest miRNA
hsa-mir-1-2/Upstream/660524; hsa-mir-122/Downstream/629511;
Nearest TSS
ENST00000575820/Upstream/109943; ENST00000591412/Downstream/96272;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/11247, chr18-CpG: 116/Downstream/94854
Nearest cancer related gene
ZBTB7C(TSG, No orient, 0)
Upstream sequence
CATAAGAAGGATTTAGGTATCACCTAAATTCAAAGAAATGTGTGTTTCTAGGTTGCTAAATTCAAAGAAAAAGTATGATTTGGTTTGGTTCATTTAAAAC
Downstream sequence
ATCAATGTCATTGGCCATGTTCTCAGCCAGAGCCCTGCAGAGACACACAGAGAAGAAGACTGGGTTAGTGAGCGTGGCCCCAGGAGGGGTCTCAACTCTA
Reference
Khoury, J. D., et al. Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq. J Virol,2013, 87(16): 8916-8926.
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