Basic Information
VIS ID
TVIS20004855
Fusion event
HPV-chr1:q44 integration
Validated
Yes
Detection method
RS-PCR
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Good
Reported year
2008
PubMed ID
18922896
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
L2
Start
5087
End
5053
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
Not given
Start
244169110
End
244169844
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
GGANCTGGAGCNNTATTAATACTATTATGTGAAGAAAATAGATAATTTAGAAAAGTAGATTAAACATATTTTCTTTTGTAATGGACATTGCTGAAAATACAGTTTGACAAACTCTTCTTAGCTAGTTAGCAGGACCCTCTTGACTAAGAAAGCATTATAGAAGTATCGGTTTAAAAAGATAGACAGGCCAGGCACCATGGTTCACACCTGTAATCCCAACACTTTGGGAGGCCAAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCAGCCTGGCCAATACGGTGAAACCCCATCTCTACTAAAATACAAAAAATTAGCTAGGCATGGTGGTGGCAGGTGTCTGTAGTCCAAGCTACTCGGGAGACTGAGGCAGGGGAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCACCACTCCACTCCAGCCTGGCGACAGAGCAAGACTCCGTCTCAGGAAGAAATAAATAAATAAATAAATAGCCAAACCCTGGCCTAGAGGAGACAGGCTGACTGTTGGGTCCAGATCTGGTCCCCATCAACTTTTCTAGTCTCTTCTCTAGTGTCTGCCTTCTCATGTTTTCCTCTCAGTTTTCCTGTCTTCACACCTTCATGTCTCTGCCAGGTGGAACAGTCCCACTGCTTAGAATGTTCTCCCCTCCTTCCTCTAGCTACTGAAATACCACTGGTCCCTTAAGAATGGTTCGAAAGTCTTTTCCTGTGGGAGGCTTTTCATGTCATTGAAAAAGAAGAAGAGAGAGGGACAGCTGCAATCACTGTGGCTCCAGTCGGTGCCGGGGAGACTNGGGNGGTTTGGNANTGGGAGGAATTCTCCACAGTGCAGCATAGCGGCTATGGCAAATCATGGCCAGACTGNTTTCNTTTAGGTGGGGTCGCANAATCCATCCCTCCTCACCTTTCCNNTCNNGAATTTTCAGCAACTCCAGCCAGGGNGTTACGGGACANNACTTCTGATCTCCCCGGAACACA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.
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