hsa-mir-21-5p _CESC.png
TP63 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004857
Fusion event
HPV-TP63 integration
Validated
Yes
Detection method
RS-PCR
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Good
Reported year
2008
PubMed ID
18922896
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
L2:L1
Start
5540
End
5791
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
Not given
Start
191094700
End
191094127
Location type
Intronic
Target gene
TP63
miRNAs that regulate target gene
hsa-mir-203a-3p ; hsa-mir-92a-3p ; hsa-mir-21-5p ; hsa-mir-124-3p ; hsa-mir-301b-3p ; hsa-mir-129-5p ; hsa-mir-6885-3p ; hsa-mir-4477b ; hsa-mir-1178-3p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4428
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearest cancer related gene
TP63(OG, No orient, 0)
Junction sequence
ACTTGCCAGATCNNGTGCAACAGGGAAAGGTGTCNTGGATAATGAAAACAGGGAGAAAAACGGACATTTAGTCCACNNCATCCTATCATTCCCTGATGCTCTGGTTNAATTGATCTGAATCTATTGATCCACANNTTANAAAATAAAATTAGTTCTCTGANTCTTCAACTCTATGGAACTAAGCCCAAAGGCNCAGCCTTGAGGTGNCTTTCCTGCCTGTGTAAAACACTTCACTTANNCTCTACTGGCCTCANTTTCTTCATTGGTAAAATTGGGATAATAGCTAGATGAGAGGGCAAAAATCCCAAATAGAAACATGAGGTACCTACTTATGCTTGAATTTACCTGGCTAGTCACTAGAAGAAAGGTATTAATGGAATGTCACCACCACTTGGTTGAGGAGATGAGAAGAAAAGATTGAGTACTTTCTATGTGCCAGGCCCTGAATTATTTTATATTCATGATATCATTTAATCCCCAGATTAGTGGTAAACATTATTAGACCTGTTTTATAGATAGAACAACTGAAGGCCAGAGAGGTTGACAAGTTTAAAGTCACATAACTAAGTGAAAACAATATACAATTATTGCTGATGCAGGTGACTTTTATTTACATCCTAGTTATTACATGTTACGAAAACGACGTAAACGTTTACCATATTTTTTTTCAGATGTCTCTTTGGCTGCCTAGTGAGGCCACTGTCTACTTGCCTCCTGTCCCAGTATCTAAGGTTGTAAGCACGGATGAATATGTTGCACGCACAAACATATATTATCATGCAGGAACATCCAGACTACTTGCAGTTGGACATCCCTATTTTCCTAT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.
Curate