Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004858
Fusion event
HPV-SLC9A9 integration
Validated
Yes
Detection method
RS-PCR
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E2:E4
Start
3090
End
3493
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
Not given
Start
End
(Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
CATGGATATACAGTGGAAGTGCAGTTTGATGGAGACATATGCAATACAATGCATTATACAAACTGGACACATATATATATTTGTGAAGAAGCATCAGTAACTGTGGTAGAGGGTCAAGTTGACTATTATGGTTTATATTATGTTCATGAAGGAATACGAACATATTTTGTGCAGTTTAAAGATGATGCAGAAAAATATAGTAAAAATAAAGTATGGGAAGTTCATGCGGGTGGTCAGGTAATATTATGTCCTACATCTGTGTTTAGCAGCAACGAAGTATCCTCTCCTGAAATTATTAGGCAGCACTTGGCCAACCACTCCGCCGCGACCCATACCAAAGCCGTCNCCTTGGGCACCGAAGAAACACAGACGACTATCCAGCGACCAAGATCAGAGCCAGACAATTATGTCATTATTGGTCAAATAAATGTAACTAGATATCATTTACTTTTCTTCTCTCACAGCCTGTGGATTTTGATTATTTCATTCTTTCCTGTTTACGCATACATTTAAATCAGATTCCACAAAAACTCACTGACATTATCTAAGTGAAGGGGCATGTTTGAAAGGGACAACATGTTCCTTGGTACTCACAGACTCAGAAAATATGCTGCAAGGTTGTGATGACATTTGAATGCTATTTCCAGAGTAAATGATGAAATAC
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.