Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004859
Fusion event
HPV-RASSF6 integration
Validated
Yes
Detection method
RS-PCR
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Good
Reported year
2008
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E2
Start
3690
End
3641
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
Not given
Start
End
74699623
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p ; hsa-mir-128-3p ; hsa-mir-181a-5p ; hsa-mir-1277-5p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-5580-3p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1256 ; hsa-mir-6778-3p ; hsa-mir-5588-5p ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-4528
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
GGACGGANTAACTGTAATAGTAACACTACACCCATGTACAATGTACAATGCTTTTTAAATCTATATCTTAAACATTTTAAAGTATTAAACAGTTTAAATACCTGAAAGGTAAGAACATGCTTTGGTAAAAGTCCCATTGTTAGTATTAACAGTGAAGTGAAATACAAAAGTTAGCCGGGTGTG
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.