Basic Information
VIS ID
TVIS20004860
Fusion event
HPV-chr4:q35.2 integration
Validated
Yes
Detection method
RS-PCR
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Good
Reported year
2008
PubMed ID
18922896
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E1
Start
1733
End
1760
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
Not given
Start
144727102
End
144727357
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
TTGAAAAATTGCTGTCTAAACTATTATGAGAGGTCTCTCTCAGCAGAGTGGCTACAAACTTTAGCCCTGCCCTGATGAGATTCCTGGGCATTTGGTCACGGATGTTGACAGTGTGCCTTTTACTAACGACTTCATTCTGGCAGACAGCCTACTGCCTAAATGTCCAACCTGTGACCAGGCCTCCCTTCCACAAGAAGCTTGTTGATACTGGCAGACACCCTGTGGCTCTTGCCTGACCTGTGTGCAGTTTATTCCTACCAGGATGGCCGATCTCTAGGAGAGTCTTGACGGAGAAAGAAGCTGGGTTCAGTTGAGTCGGCCAGGTGAGACACAGTGGAGGCAGTACAGCGAAATCCAGAACAGAGCAGTTTTATTACTCACAGACCCCGCGGCGGGAGGGCAGCAGACCTTACGGGGCCAGCAGGAAGCGGGGAGCAGTCAGGGCTGTCAGGGACACAGGCTCANGCAGAAGGTGCGGCTGACTGAAAAAGGANGACTTGGGGGCTGTGCCTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.
Curate