Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20004862
Fusion event
HPV-MAPK10 integration
Validated
Yes
Detection method
RS-PCR
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E2:E4
Start
3103
End
3750
Host Sequence
Chromosome
chr4
Cytoband
q21.23
Reference genome
Not given
Start
End
(Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-221-3p ; hsa-mir-574-5p ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-6867-5p ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-5002-5p ; hsa-mir-499a-5p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-3152-3p ; hsa-mir-641 ; hsa-mir-3617-5p
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearest cancer related gene
MAPK10(TSG, No orient, 0)
Junction sequence
TGGAAGTGCAGTTTGATGGAGACATATGCANCNNCAATGCATTATACAAACTGGACACATATATATATTTGTGAAGAAGCATCAGTAACTGTGGTAGAGGGTCAAGTTGACTATTATGGTTTATATTATGTTCATGAAGGAATACGAACATATTTTGTGCAGTTTAAAGATGATGCAGAAAAATATAGTAAAAATAAAGTATGGGAAGTTCATGCGGGTGGTCAGGTAATATTATGTCCTACATCTGTGTTTAGCAGCAACGAAGTATCCTCTCCTGAAATTATTAGGCAGCACTTGGCCAACCACTCCGCCGCGACCCATACCAAAGCCGTCGCCTTGGGCACCGAAGAAACACAGACGACTATCCAGCGACCAAGATCAGAGCCAGACACCGGAAACCCCTGCCACACCACTAAGTTGTTGCACAGAGACTCAGTGGACAGTGCTCCAATCCTCACTGCATTTAACAGCTCACACAAAGGACGGATTAACTGTAATAGTAACACTACACCCATAGTACATTTAAAAGGTGATGCTAATACTTTAAAATGTTTAAGATATAGATTTAAAAAGCATTGTACATTGTATACTGCAGTGTCGTCTACATGGCATTGGACAGGACATAATGTAAAACATAAAAGTGCAATCAGTAGTCAGCTATGCTTTCTGCAATATCCTTAGAATTCATGTCTCTGTTATTGCATATGAACATGTGTTTAACATAAGATAACCTTTCTCTATGGACACATGGCAAAGCTATAATATAGTGATATATCTTCTGCCGGGGCTGACAAGACTGTTTTGCAAATATACCCCCGTATGTCTTTATAATCCAAATAAATGGGAAGTATCNAATAATTGGGATTTTTTATTCTGATCNAAGAGCTTTTCAAGTAACTCACATGCTGTTAGGGGAGGGGAAGGGAAATTTCAAGATGANNAGAGAAGAAAATNAAGNTTTCATTGGGATGGGAAATAATGGGCAAGGGGGATAGGGGAATAAAGGACAAACTATGATAAGGTG
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.