Basic Information
VIS ID
TVIS20004873
Fusion event
HPV-chr16:p13.3 integration
Validated
Yes
Detection method
RS-PCR
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
18922896
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
L2
Start
5082
End
4936
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
Not given
Start
4575086
End
(Hg38)
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
GTCNGGANCTGGAGCTATATTAATACTATTATCATTACTAGAAAAATATAATGTATTATCCACATCTATACCTTCATATGCAGGATTATCATATGTAATAAGTTTAGTGGGAGTGGTTATNAAATCAGGNTCTANAACTTTAACTTGGTGTTGCNCCACTATTTGCTGGCTATACNGGTGTGAGCCACCNNCCCTGGNTCCNNTANGCNNNTTTCNATCCNNCCCTCTCTCAATTATCCTGAGTCTCCTGTGTCCATTATCCTGCNCGGTCTGTCTTTACACACCTATGGTTTANCTCATTTACAAGTGANAACATGCTTTCTTTGCTTTCCNCTCCTGANTTGCTTCACTTAAAATAATGACCCCGGCCTCCATCCAAGTTGCTCCAAAACCAAGGGACACCTTGAACCACCANAAGCTGGGAGAGGCGAGGAGGCCCCTCTGAGCTTTCAGGTGGAACACAGCCTATGACACCTTGATTTCAGAATTCCCCCCTCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.
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