Basic Information
VIS ID
TVIS20004874
Fusion event
HPV-chr17:q12 integration
Validated
Yes
Detection method
RS-PCR
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
18922896
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E1
Start
2678
End
2415
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
Not given
Start
33355996
End
(Hg38)
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
TTAAGCTCATACNCTNGGATTTCCGTTTTCGTCAAATGGAAACTCATTANNNANNGTAAACACCACCAATCTATTATGTAAATAAGGCCACCTAGAATCTGTACCAGCATTAATGTTAGATGTAATTAATAATGGAGGGCATTTTAGTTGTACCAATGGTCTATGCTTTACATCCATAGAAACTAAATTTCCATCCAATGCATTTCTTAAATTGTCATCTATGTAGTTCCAACAGGGCACTGTAGCATCATCTAACATACCTATTANNGNGGGCNAAAAAGGGATGTNGNGTTGGATTNGTTAAGNNAAANTGTCTTGTGCTGTTGCCCAGGCCGCAANGCAGNGGCATGATCATCGCTCACTGCNGCTAAAAACCCTTGGTANCCNGNCTTCCTCCCGCCACAGTTTCACAAGTAGTTGGGAGTCCCNGGGCATGCCACCNTGCCCAGCTAATTTTCGCATATTTTGTTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.
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