Basic Information
VIS ID
TVIS20004878
Fusion event
HPV-chr21:q22.1 integration
Validated
Yes
Detection method
APOT and sequencing
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
18922896
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Not given
Gene
E4
Start
3409
End
3550
Host Sequence
Chromosome
chr21
Cytoband
q22.1
Reference genome
Not given
Start
29577377
End
(Hg38)
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Junction sequence
CTCCGCCGCGACCCATACCAAAGCCGTCGCCTTGGGCACCGAAGAAACACAGACGACTATCCAGCGACCAAGATCAGAGCCAGACACCGGAAACCCCTGCCACACCACTAAGTTGTTGCACAGAGACTCAGTGGACAGTGCTACATTATTAAGCTGGAGACATGAGGGGGACTCTCTGCAGATCACTGGAGTTCTCTATGAAGCTCCCTTTCTTCAGCATTCTTCTCTGCAAATTCCAGCTGCCTTGGTTTTTCCAGATGACCAGCTCCAGCTTCTTAACTCTGATTGACCACCAGGCTCCCCACTTGGGTTTCCTCTCTTCAGGCAGTAATCTGGGGCACCCATAGGACTCATTTTATTTGTTTCCCACTCTCAGGGAACACTGTCCTGTGTTGCTAGAATCCAATAAAAAAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Dall, K. L., et al. Characterization of naturally occurring HPV16 integration sites isolated from cervical keratinocytes under noncompetitive conditions. Cancer Res ,2008,68(20): 8249-8259.
Curate