Basic Information
VIS ID
TVIS20005055
Fusion event
HPV-LINC00475 integration
Validated
Yes
Detection method
RNA-Seq+RT-PCR
Data source
Curated
Sample type
Tumor
Disease
Adenocarcinoma (AC)
Quality evaluation
Good
Reported year
2014
PubMed ID
24390348
Virus Sequence
Virus name
HPV
Subtype
HPV18
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
94912835/92150553 (Hg38)
End
94913715/92151433 (Hg38)
Location type
Intronic
Target gene
LINC00475
Nearest miRNA
hsa-mir-101-2/Upstream/514192; hsa-let-7a-1/Downstream/141025;
Nearest TSS
ENST00000422679/Upstream/35169; ENST00000457003/Downstream/53923;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/9008, chr9-CpG: 52/Downstream/142047
Nearby gene
SPTLC1 ; IARS(+) ;
Upstream sequence
tatactctattgatttggagtggagagttctgtagatgtctattgggtctgcttggtgcagagctgagttcaattcctggatacccttgttaactttctg
Downstream sequence
AATTCTTGCGATTCCAAAAAAAAAAAAAAAAGAAAAACATCATGAAATTGCATATTAGAAATGAAATCTTGTATTCCAAGCACAACATGAGAAAGCAGCA
Reference
Ojesina, A. I., et al. Landscape of genomic alterations in cervical carcinomas. Nature,2014,506(7488): 371-375.
Curate