Basic Information
VIS ID
TVIS20005071
Fusion event
HPV-chr13:q31.2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Squamous-cell carcinoma (SCC)
Quality evaluation
Good
Reported year
2014
PubMed ID
24390348
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
HQ644271.1
Host Sequence
Chromosome
chr13
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
88918788/88266533 (Hg38)
End
88932977/88280722 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/647793; hsa-mir-1267/Downstream/1950460;
Nearest TSS
ENST00000623511/Upstream/123666; ENST00000424165/Downstream/260142;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/588903, chr13-CpG: 41/Downstream/1082436
Upstream sequence
aactaattttttaattttttgtagagacagagtcttattatgttgcccaggctggtctcagactcctgggctcaagtgatcctctcacctcaccctccca
Downstream sequence
ctcaggaccgacccccaacacccctgtttgcttctgggcctataactaaattcctggcaggcccctagaggtaagattcagaatgtgatccatagggtgt
Target sequence
ttcactcattggttgatgcacatttaggctggttccacatttttgcaattgtgaattgtgctgttataaacatgcatgtgcaagtgtctttttcatataatgacatcttttcctttgggtagacacccaggagctggattgctggattctatattttgttccttaaaaacctccttactgttttccatggtgtttgtcctaatttacattcccacgagcaggctaagagtgttctgttttcaccacatccacacc
Reference
Ojesina, A. I., et al. Landscape of genomic alterations in cervical carcinomas. Nature,2014,506(7488): 371-375.
Curate