VISDB Viral Integration Site DataBase

VIS ID

TVIS20005080

Fusion event

HPV-TBL1XR1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Adenocarcinoma (AC)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HPV

Subtype

HPV18

Reference genome

Not given

Chromosome

chr3

Cytoband

q26.32

Reference genome

Start

End

176754943/177037155 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-122-5p ; hsa-mir-21-5p ; hsa-mir-30c-5p ; hsa-mir-548c-3p ; hsa-mir-5691 ; hsa-mir-6805-3p ; hsa-mir-4433b-5p ; hsa-mir-4427 ; hsa-mir-506-5p ; hsa-mir-3613-3p ; hsa-mir-5003-5p ; hsa-mir-4668-5p ; hsa-mir-625-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-3148 ; hsa-mir-6770-5p ; hsa-mir-3179 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-3154 ; hsa-mir-4314 ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-505-5p ; hsa-mir-3194-3p ; hsa-mir-767-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-1277-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-511-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6509-3p ; hsa-mir-4711-3p ; hsa-mir-6830-3p ; hsa-mir-627-3p ; hsa-mir-4742-3p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-181c-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-550b-2-5p ; hsa-mir-4684-5p ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-942-5p ; hsa-mir-554 ; hsa-mir-5088-3p ; hsa-mir-5579-5p ; hsa-mir-382-5p ; hsa-mir-7150 ; hsa-mir-4433a-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-6834-3p ; hsa-mir-186-3p ; hsa-mir-4448 ; hsa-mir-7110-3p ; hsa-mir-6758-3p ; hsa-mir-7705 ; hsa-mir-1278 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p

Nearest miRNA

hsa-let-7g/Upstream/509023; hsa-mir-1224/Downstream/6849645;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/2582616, chr3-CpG: 133/Downstream/159294

Upstream sequence

GTGGAACTTGACTCATAAAGGCGAGAGACTTGACTATTGAAAAAGGTCTCCTATGAAATCTGAatttcacttaatcctcagaacaactgttgagggggtt

Downstream sequence

ataccacagcaaaatcaaattaatacaACGCAAAGAATTCCAATCAAATCCATGAATGCTACAAAGATTTTGAGTACTTATTAAGTCAAATCTTTACATA

Target sequence

ATCAGAGCAGCAGGAAGAAGGTTAGTGCAATTATACTTTCATTAAAAAAAATTCTGAATCACTGCTATTTAAAAACACCTTGAAGCAAGTCTTTTGTTTGAGATTGTTTTTTAAACTAAGGTAGCAAACATTTTGCCATGTAATGGCAGTGTTATATGCCGTTATCTTGCTTTGTATAAAGAAAACAACATGAGAGATTTTTAATACTGGAGTTTGGTTACATTACATATTTAAGCTTCTACACAGAATGATGGA