Basic Information
VIS ID
TVIS20005085
Fusion event
HPV-chr3:p25.1 integration
Validated
Yes
Detection method
RNA-Seq+RT-PCR
Data source
Curated
Sample type
Tumor
Disease
Squamous-cell carcinoma (SCC)
Quality evaluation
Good
Reported year
2014
PubMed ID
24390348
Virus Sequence
Virus name
HPV
Subtype
HPV45
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
13819967/13778470 (Hg38)
End
13820197/13778700 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/3383908; hsa-let-7g/Downstream/1717539;
Nearest TSS
ENST00000440867/Upstream/127749; ENST00000432444/Downstream/96413;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/122843, chr3-CpG: 34/Downstream/40237
Nearby gene
LINC00620 ; WNT7A(+) ;
Nearest cancer related gene
WNT7A(TSG, +) ;
Upstream sequence
cagacaggctgttgcccagctttgctcctctgctttctgtgttcccctgatgccttgatggatcctgacatggtttctcagatgattggcctgcagggtc
Downstream sequence
tggcctcccaaaatgcagggattacaggtgtcagccaccatgcctggtcttatggtattttgttatagcagcctgagtgggctaagacaCATCTACAAGC
Target sequence
agggtctcactgtgtcacccaggctggagtgcagtgatgcactctcggctcactgcagcctcgatctcccaagtacaagcgatcctatcagctcagcctcctgagtagctgggactataggcgcacaccactgtgtccagctaagttttgtatttttttggtggagacagcgtttctccatgttgcctagactgatctgtaacccctgagctcaagtggtccacctgcct
Reference
Ojesina, A. I., et al. Landscape of genomic alterations in cervical carcinomas. Nature,2014,506(7488): 371-375.
Curate