Basic Information
VIS ID
TVIS20005088
Fusion event
HPV-chr7:q11.21 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Squamous-cell carcinoma (SCC)
Quality evaluation
Good
Reported year
2014
PubMed ID
24390348
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
HQ644271.1
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
61969189/62508811 (Hg38)
End
61969322/62508944 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA7J
Nearest miRNA
hsa-mir-1183/Upstream/5103721; hsa-mir-10399/Downstream/1112146;
Nearest TSS
ENST00000635602/Upstream/5058634; ENST00000418297/Downstream/545487;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/127914, chr7-CpG: 49/Downstream/545193
Upstream sequence
TAAACATTACAAAGAAGGATTGGGTCACACTTGGGGTAGAAAGGAATGAAAAATTGCCATTAGGACTTCTAAATCTGAAATTCAAATATGAAGATGCGGC
Downstream sequence
ggcttcgttgcaaacggggtttcttcctttcatgctagactaagaagagttctcaggaacttttttgtgttgtgtgtattcaactcacagagttgaacct
Reference
Ojesina, A. I., et al. Landscape of genomic alterations in cervical carcinomas. Nature,2014,506(7488): 371-375.
Curate