VISDB Viral Integration Site DataBase

VIS ID

TVIS20005101

Fusion event

HPV-chr9:q22.32 integration

Validated

Yes

Detection method

RNA-Seq+RT-PCR

Data source

Curated

Sample type

Disease

Squamous-cell carcinoma (SCC)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr9

Cytoband

q22.32

Reference genome

Start

End

97958920/95196638 (Hg38)

Location type

Intronic

Target gene

AOPEP ; FANCC

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-15b-5p ; hsa-mir-218-5p ; hsa-mir-6820-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6087 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-6510-5p ; hsa-mir-6089 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-518f-3p ; hsa-mir-518c-3p ; hsa-mir-518d-3p ; hsa-mir-518b ; hsa-mir-518a-3p ; hsa-mir-6849-3p ; hsa-mir-4293 ; hsa-mir-6771-3p ; hsa-mir-3180-5p ; hsa-mir-2355-5p ; hsa-mir-1236-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-4793-5p ; hsa-mir-510-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-5192 ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-3613-3p ; hsa-mir-6760-5p ; hsa-mir-7844-5p ; hsa-mir-5007-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4786-5p ; hsa-mir-587 ; hsa-mir-302c-5p ; hsa-mir-873-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-1193 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1224-3p ; hsa-mir-2392 ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-1273f ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-6812-3p ; hsa-mir-6733-3p ; hsa-mir-1306-5p ; hsa-mir-1343-3p ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-4264 ; hsa-mir-4279 ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-498 ; hsa-mir-622 ; hsa-mir-660-3p ; hsa-mir-6727-3p ; hsa-mir-6742-3p ; hsa-mir-6747-3p ; hsa-mir-6783-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p

Nearest TSS

Nearest CpG islands

chr9-CpG: 45/Target, None/Upstream, None/Downstream

Nearby gene

FBP1 ; PTCH1(+) ;

Upstream sequence

agctatgattgtttcactgcacttcaggctgtgtgaaagagcaagactttgtctcaaaaaataaaaggacatttcataataattgaggaaatctgaatgt

Downstream sequence

actagcaatccaggattaccctaatccagggtcagtgactgagatgatctgagggtaaactgcacactctctgagggcctgtctgcttcggttcacattt