Basic Information
VIS ID
TVIS20005116
Fusion event
HPV-chr7:p21.1 integration
Validated
Yes
Detection method
RNA-Seq+RT-PCR
Data source
Curated
Sample type
Disease
Squamous-cell carcinoma (SCC)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV45
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
End
17444267/17404643 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-339/Upstream/10295857; hsa-mir-10399/Downstream/722577;
Nearby gene
AHR ; SNX13(+) ;
Upstream sequence
GGActttactacacgttggaataatctgaagatctataaaaatattgatgccttcctagcactcccagatattctaatttaactggcatgaggtgaaagc
Downstream sequence
tttttgcccattcagtatgatactggctgcgggtttgtcataaacagctcttattttgagatatgttctatcaatacctagtttattgagagtttttacc
Reference
Ojesina, A. I., et al. Landscape of genomic alterations in cervical carcinomas. Nature,2014,506(7488): 371-375.
Curate