Fusion event
HPV-chr4:q22.2 integration
Detection method
RNA-Seq+RT-PCR
Disease
Squamous-cell carcinoma (SCC)
End
94789178/93868027 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/6567088; hsa-mir-1243/Downstream/5129360;
Upstream sequence
gctagagaggaagttattgtttaatgacaagagtttcaagttttgcaaaatgaaaagagttctgtggatagatggtggtgatgaagcacacaatgtgaat
Downstream sequence
gatcacacactgacttcttgttattcttatgatcccatctcccctcaattcctgccacactaattccttgcccttctttggacatcctgaacgtactcct
Target sequence
aaccttttcagttgttcagattaaaaatctcgcagtcatcgatgactcctctttttcttttacaggcaatccatcaaacaaatcctgtttgctcacctttcaaaatatgtctggaatacaacccctgctactcgactggttccaccctgttgtatgccaccatcacttcttgcctgaaatatagtaataacctctccccggcttttcccaggcttcccatatcctattctcaacacagtagcagagtgtttcttc
Ojesina, A. I., et al. Landscape of genomic alterations in cervical carcinomas. Nature,2014,506(7488): 371-375.