VISDB Viral Integration Site DataBase

VIS ID

TVIS20005248

Fusion event

HPV-NFIX integration

Validated

Yes

Detection method

DIPS-PCR

Data source

Curated

Sample type

Disease

Adenocarcinoma (AC)

Quality evaluation

Normal

Reported year

2006

PubMed ID

Virus name

HPV

Subtype

HPV18

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Not given

Start

End

(Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-223-3p ; hsa-mir-124-3p ; hsa-mir-324-5p ; hsa-mir-149-5p ; hsa-mir-506-3p ; hsa-mir-765 ; hsa-mir-4459 ; hsa-mir-5582-5p ; hsa-mir-6748-5p ; hsa-mir-6742-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-92a-2-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-6789-3p ; hsa-mir-149-3p ; hsa-mir-6804-5p ; hsa-mir-7150 ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-212-5p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-3144-5p ; hsa-mir-6781-5p ; hsa-mir-744-5p ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-3648 ; hsa-mir-6869-3p ; hsa-mir-6846-3p ; hsa-mir-4734 ; hsa-mir-6752-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-6825-5p ; hsa-mir-3184-5p ; hsa-mir-423-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6845-3p ; hsa-mir-1199-5p ; hsa-mir-1275 ; hsa-mir-139-3p ; hsa-mir-24-1-5p ; hsa-mir-24-2-5p ; hsa-mir-25-5p ; hsa-mir-3064-5p ; hsa-mir-3141 ; hsa-mir-3202 ; hsa-mir-4294 ; hsa-mir-4303 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4525 ; hsa-mir-4665-5p ; hsa-mir-4722-5p ; hsa-mir-4747-5p ; hsa-mir-483-5p ; hsa-mir-5001-5p ; hsa-mir-5010-5p ; hsa-mir-516b-5p ; hsa-mir-5196-5p ; hsa-mir-541-3p ; hsa-mir-5580-5p ; hsa-mir-604 ; hsa-mir-625-5p ; hsa-mir-647 ; hsa-mir-6504-5p ; hsa-mir-6515-5p ; hsa-mir-654-5p ; hsa-mir-6746-5p ; hsa-mir-6751-3p ; hsa-mir-6758-5p ; hsa-mir-6762-3p ; hsa-mir-6807-5p ; hsa-mir-6856-5p ; hsa-mir-6882-3p ; hsa-mir-762 ; hsa-mir-941 ; hsa-mir-9500 ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-1179 ; hsa-mir-1288-3p ; hsa-mir-155-3p ; hsa-mir-1914-3p ; hsa-mir-296-5p ; hsa-mir-3169 ; hsa-mir-3685 ; hsa-mir-384 ; hsa-mir-3918 ; hsa-mir-4685-5p ; hsa-mir-4788 ; hsa-mir-4797-5p ; hsa-mir-5194 ; hsa-mir-6089 ; hsa-mir-615-5p ; hsa-mir-6738-5p ; hsa-mir-6761-3p ; hsa-mir-6837-5p ; hsa-mir-6840-3p ; hsa-mir-7113-5p ; hsa-mir-7160-3p ; hsa-mir-874-5p

Nearest CpG islands

None/Target, None/Upstream, None/Downstream