Basic Information
VIS ID
TVIS30000030
Fusion event
HIV-chr9 integration
Validated
Yes
Detection method
dd-PCR+WGA
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30688658
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
130751931/127989652 (Hg38)
End
130751931/127989652 (Hg38)
Orient
-
Location type
Inergenic
Nearest miRNA
hsa-let-7a-1/Upstream/120157; hsa-mir-12126/Downstream/255069;
Nearest TSS
ENST00000422679/Upstream/9139; ENST00000472769/Downstream/67710;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/8445, chr9-CpG: 103/Downstream/77604
Nearby gene
FAM102A(-9119) ;
Upstream sequence
GTGGTGGGGGCTGGGGTTcagggagcaatgggaacacagagaaggtctgcctggggtgggtggtcagggcaggcttccctcaggaagtgacatgtaagcc
Downstream sequence
caagcctgatgagtggatagaagcagccaggagagcagggagccgctggagaagacagtctgagtcgacctgcagcagaagacagagggtcccatgatct
Reference
Einkauf, K. B., et al. Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy. J Clin Invest,2019, 129(3): 988-998.
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