Basic Information
VIS ID
TVIS30000044
Fusion event
HIV-FAM168A integration
Validated
Yes
Detection method
dd-PCR+WGA
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
End
73256917/73545872 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10392/Upstream/762280; hsa-let-7a-2/Downstream/853365;
Upstream sequence
tcctgggctcaagtggtccacttgccccagcctcccaaagtgttgggattacaggcataagccacggcgcccagccaaCATACTCTttattttacttaat
Downstream sequence
attcacaacaaaaaaaccctgtgagatgagggttagcaattcacccatcttgcagacaaaacacctacatctcacagaaattaaaagatttaaggttttt
Reference
Einkauf, K. B., et al. Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy. J Clin Invest,2019, 129(3): 988-998.
Curate