Basic Information
VIS ID
TVIS30000067
Fusion event
HIV-chr1 integration
Validated
Yes
Detection method
dd-PCR+WGA
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30688658
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
32451046/31985445 (Hg38)
End
32451046/31985445 (Hg38)
Orient
-
Location type
Inergenic
Nearest miRNA
hsa-mir-12136/Upstream/226710; hsa-mir-101-1/Downstream/101504;
Nearest TSS
ENST00000473358/Upstream/40589; ENST00000492989/Downstream/1589;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/40416, chr1-CpG: 155/Downstream/28056
Nearby gene
KHDRBS1(+28249) ;
Upstream sequence
ggagcggggggtctaaacgcagaaggaagggagaCATTAGGAGATATAGTTAGAGAGATCTATGTTGCTTTTGTTTTCCCAGGCTCAGTGCTTTAGAGAA
Downstream sequence
ccatccctttgccttactaatcttacttattcttcaggttttacccttcaaaaatcacttcctTataccacacagccaccaaaaagaatgaggtgaagct
Reference
Einkauf, K. B., et al. Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy. J Clin Invest,2019, 129(3): 988-998.
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