VISDB Viral Integration Site DataBase

VIS ID

TVIS30000075

Fusion event

HIV-MTMR3 integration

Validated

Yes

Detection method

dd-PCR+WGA

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr22

Cytoband

q12.2

Reference genome

Start

End

30289343/29893354 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-181a-5p ; hsa-mir-877-5p ; hsa-mir-423-5p ; hsa-mir-106b-3p ; hsa-mir-125b-5p ; hsa-mir-27b-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-99a-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-4310 ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-mir-7157-5p ; hsa-mir-218-5p ; hsa-mir-646 ; hsa-mir-490-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-503-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-196a-3p ; hsa-mir-8073 ; hsa-mir-3128 ; hsa-mir-221-5p ; hsa-mir-6884-3p ; hsa-mir-1914-3p ; hsa-mir-3188 ; hsa-mir-4257 ; hsa-mir-4636 ; hsa-mir-5194 ; hsa-mir-595 ; hsa-mir-6736-3p ; hsa-mir-6738-5p ; hsa-mir-6847-5p ; hsa-mir-6866-5p ; hsa-mir-6873-5p

Nearest miRNA

hsa-mir-1286/Upstream/1433406; hsa-let-7a-3/Downstream/113695;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/9485, chr22-CpG: 50/Downstream/186669

Upstream sequence

TCAACCTTTCACATATCCCTTTACTTTCTCTTAAGATACTTTCATGGTGACAAAAAAAATACTCTTAATGTCATTCCTTTCACTGTGTGTGTAACTCCTG

Downstream sequence

TGGCAAGACTGTATATTTGTATGTATGTATTTGTTTATTTAGTAGGCTGCTATTTATAAAGGAAACATACTCATTAGTTGGTCTTTGCGTACATAATGGT