Basic Information
VIS ID
TVIS30000117
Fusion event
HIV-PRDM2 integration
Validated
Yes
Detection method
dd-PCR+WGA
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
p36.21
Reference genome
End
14031190/13704695 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/1125672; hsa-mir-101-1/Downstream/3154254;
Nearest cancer related gene
PRDM2(TSG, No orient, 0)
Upstream sequence
GCTAAGTGCAAGTGTTAGTTTGATTATAGGGGGCAGTCTGTCTGGAAATTGGTAAAACCCACACATTTTATATGTGCTTATATGTAGTTCTATTAAGACC
Downstream sequence
TATGTTAAACTCTGGTGGGATAATTCCGTGGCACTTTCACATAATTTAAATTATGCCATGTAAGAGTCACTAAACCCTTATATACTTCAGTATGAATCCT
Reference
Einkauf, K. B., et al. Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy. J Clin Invest,2019, 129(3): 988-998.
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