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TVIS30000135
Basic Information
VIS ID
TVIS30000135
Fusion event
HIV-HIF1A integration
Validated
Yes
Detection method
dd-PCR+WGA
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30688658
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr14
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
62172442/61705724 (Hg38)
End
62172442/61705724 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA14B
Target gene
HIF1A
miRNAs that regulate target gene
hsa-mir-20a-5p
;
hsa-mir-519c-3p
;
hsa-mir-20b-5p
;
hsa-mir-107
;
hsa-mir-18a-5p
;
hsa-mir-17-5p
;
hsa-mir-424-5p
;
hsa-mir-199a-5p
;
hsa-mir-138-5p
;
hsa-mir-199b-5p
;
hsa-mir-33a-5p
;
hsa-mir-106b-3p
;
hsa-let-7b-5p
;
hsa-mir-210-3p
;
hsa-mir-3121-3p
;
hsa-mir-3668
;
hsa-mir-6815-3p
;
hsa-mir-589-3p
;
hsa-mir-889-3p
;
hsa-mir-935
;
hsa-mir-1910-3p
;
hsa-mir-3074-3p
;
hsa-mir-5094
;
hsa-mir-6511a-5p
;
hsa-mir-6755-5p
;
hsa-mir-6806-5p
;
hsa-mir-93-5p
;
hsa-mir-106a-5p
;
hsa-mir-106b-5p
;
hsa-mir-519d-3p
;
hsa-mir-4282
;
hsa-mir-8055
;
hsa-mir-153-5p
;
hsa-mir-18b-5p
;
hsa-mir-3662
;
hsa-mir-4735-3p
;
hsa-mir-576-3p
;
hsa-mir-151a-3p
;
hsa-mir-5681b
;
hsa-mir-155-5p
;
hsa-mir-5692a
;
hsa-mir-22-3p
;
hsa-mir-21-5p
;
hsa-mir-5089-3p
;
hsa-mir-4662a-5p
;
hsa-mir-1322
;
hsa-mir-509-5p
;
hsa-mir-509-3-5p
;
hsa-mir-4418
;
hsa-mir-6807-3p
;
hsa-mir-217
;
hsa-mir-4799-5p
;
hsa-mir-4463
;
hsa-mir-4499
;
hsa-mir-329-5p
;
hsa-mir-4748
;
hsa-mir-4464
;
hsa-mir-449c-5p
;
hsa-mir-34b-5p
;
hsa-mir-2682-5p
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-106a-3p
;
hsa-mir-299-5p
;
hsa-mir-4470
;
hsa-mir-4487
;
hsa-mir-558
;
hsa-mir-3160-3p
;
hsa-mir-3128
;
hsa-mir-625-3p
;
hsa-mir-548ah-5p
;
hsa-mir-3609
;
hsa-mir-494-3p
;
hsa-mir-142-5p
;
hsa-mir-27a-3p
;
hsa-mir-433-3p
;
hsa-mir-429
;
hsa-mir-338-3p
;
hsa-mir-186-5p
;
hsa-mir-138-1-3p
;
hsa-mir-145-5p
;
hsa-mir-200c-5p
;
hsa-mir-497-3p
Nearest miRNA
hsa-mir-208a/Upstream/1057013; hsa-mir-1185-1/Downstream/2389300;
Nearest TSS
ENST00000550708/Upstream/6829;
ENST00000556237/Downstream/20697;
Nearest CpG islands
None/Target,
chr14-CpG: 35/Upstream/9211
,
chr14-CpG: 43/Downstream/45283
Nearest cancer related gene
HIF1A
(TSG, No orient, 0)
Upstream sequence
GCATAGGCCATATTAAAAATGGGGCTTCATATTAAAATGGGGAAAAGGGTGGAGATTCTCAGGTGGAATCTGAGATCTGCCACACACTAATAGTGTTACC
Downstream sequence
TAACCCTTTTTAAAGACAAAGAAACAGGATCAGAAGGTCACTTTGGAAAATTTATTTGGTAATATTGGATAGGATGGATTAGTATAGTTGGAAAACAGAG
Reference
Einkauf, K. B., et al. Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy. J Clin Invest,2019, 129(3): 988-998.
Sample Information
×
Sample name
Patient3
Sample type
PBMC
Age
59
Gender
Male
CpG Island Information
×
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