Basic Information
VIS ID
TVIS30000136
Fusion event
HIV-chr6 integration
Validated
Yes
Detection method
dd-PCR+WGA
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2019
PubMed ID
30688658
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26119093/26118865 (Hg38)
End
26119093/26118865 (Hg38)
Orient
-
Location type
Inergenic
Fragile sites / regions
FRA6C
Nearest miRNA
hsa-mir-3691/Upstream/7546985; hsa-mir-10398/Downstream/1028761;
Nearest TSS
ENST00000381078/Upstream/10729; ENST00000602637/Downstream/5045;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/14591, chr6-CpG: 33/Downstream/5400
Nearby gene
HIST1H2BC(-4602) ;
Upstream sequence
CAGTGAGATTCCAAATGTGTTTACACTGGGAAGCACATATCCATCTGCTCTGAAGTATAAAAGCAGTATTTGTTGTTTGAAGTACTGAAAATGGAGGTTC
Downstream sequence
CAGCATTGTTATAATGTTGTCAGAGAAGATTGGTTATTACATTAAGATATGAATATAAATCATGGCTATATAAAAATAAGAAAAAGATTGAAGTCTTATT
Reference
Einkauf, K. B., et al. Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy. J Clin Invest,2019, 129(3): 988-998.
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