VISDB Viral Integration Site DataBase

VIS ID

TVIS30000158

Fusion event

HIV-SETD5 integration

Validated

Yes

Detection method

dd-PCR+WGA

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr3

Cytoband

p25.3

Reference genome

Start

End

9455985/9414301 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-877-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-646 ; hsa-mir-1207-3p ; hsa-mir-1252-5p ; hsa-mir-1827 ; hsa-mir-3135a ; hsa-mir-3180-5p ; hsa-mir-4533 ; hsa-mir-6828-5p ; hsa-mir-448 ; hsa-mir-1253 ; hsa-mir-126-5p ; hsa-mir-590-3p ; hsa-mir-944 ; hsa-mir-4698 ; hsa-mir-6504-3p ; hsa-mir-8063 ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-374a-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-4437 ; hsa-mir-4674 ; hsa-mir-6826-3p ; hsa-mir-584-5p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-6507-5p ; hsa-mir-6759-5p ; hsa-mir-4278 ; hsa-mir-6789-5p ; hsa-mir-6824-5p ; hsa-mir-1258 ; hsa-mir-3152-3p ; hsa-mir-6793-5p ; hsa-mir-6748-5p ; hsa-mir-4455 ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6747-5p ; hsa-mir-589-3p ; hsa-mir-6782-5p ; hsa-mir-4773 ; hsa-mir-3202 ; hsa-mir-6758-3p ; hsa-mir-580-3p ; hsa-mir-4436b-5p ; hsa-mir-539-5p ; hsa-mir-4671-5p ; hsa-mir-140-3p ; hsa-mir-1278 ; hsa-mir-135b-3p ; hsa-mir-8065 ; hsa-mir-1197 ; hsa-mir-423-3p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-545-3p ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-4795-3p ; hsa-mir-556-3p ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-8055 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-548c-3p ; hsa-mir-1265 ; hsa-mir-132-3p ; hsa-mir-139-3p ; hsa-mir-194-5p ; hsa-mir-212-3p ; hsa-mir-2392 ; hsa-mir-24-3p ; hsa-mir-2467-5p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3179 ; hsa-mir-3188 ; hsa-mir-3612 ; hsa-mir-4438 ; hsa-mir-4443 ; hsa-mir-450a-1-3p ; hsa-mir-4510 ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-4742-5p ; hsa-mir-4747-5p ; hsa-mir-5095 ; hsa-mir-5196-5p ; hsa-mir-548v ; hsa-mir-5698 ; hsa-mir-650 ; hsa-mir-6515-5p ; hsa-mir-6731-5p ; hsa-mir-6788-5p ; hsa-mir-6794-5p ; hsa-mir-6809-5p ; hsa-mir-6870-5p ; hsa-mir-6871-5p ; hsa-mir-6878-5p ; hsa-mir-7111-5p ; hsa-mir-7151-3p ; hsa-mir-8085 ; hsa-mir-3121-5p ; hsa-mir-3606-3p ; hsa-mir-510-3p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-5582-3p ; hsa-mir-570-3p

Nearest miRNA

hsa-mir-4790/Upstream/4164046; hsa-let-7g/Downstream/866050;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/16225, chr3-CpG: 23/Downstream/138083

Upstream sequence

TAGGATGTTTTTGAATATTGGTACTAGAACAAATGGATTCCTACTAGATTTCCTTTTTACTTTCATATTCAGATGTAGGAAGAGTTGGAATTCAAAATGT

Downstream sequence

GAAAAGCAGTCTTGAATCTCAGTAAATTCTTAAGAAATTCTTAATTCATTGAAGAGCCATTGGTCGTGTGTGTTTTTTGGGGAGTGTGTGTGTGTGTTGT