Basic Information
VIS ID
TVIS30000172
Fusion event
HIV-HNRNPM integration
Validated
Yes
Detection method
dd-PCR+WGA
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
End
8517689/8452805 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1227/Upstream/63425; hsa-let-7e/Downstream/1585549;
Upstream sequence
GAAGCTGCTTTCCTTGGTTTTACCTTGTGTTGATTTGGGTGTGGCTCACACCAGTGATACCTCTGCTGGGATACCACTTGGCACTCTTGTGTTTGGGGAC
Downstream sequence
TACACAAAGTTGCTGACTTTAAAATTTTTCCAAGTAAATACGTTACTAtttttgagacagggtcttgctttgtcaaccaggctggagtgcagtggtgcaa
Reference
Einkauf, K. B., et al. Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy. J Clin Invest,2019, 129(3): 988-998.
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