Basic Information
VIS ID
TVIS30000187
Fusion event
HIV-chr1 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
67256725/66791042 (Hg38)
End
67256725/66791042 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/162525; hsa-mir-11399/Downstream/1392476;
Nearest TSS
ENST00000473358/Upstream/14887; ENST00000456389/Downstream/10214;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/38432, chr1-CpG: 27/Downstream/134155
Nearby gene
SPRR1B(-10022) ;
Upstream sequence
gttatagtaatatattataaataggaattcttaacatcatagaatgtaaatgtttcctacatttgtatgtatgtaatgcaactcaaatcataattccaat
Downstream sequence
gagtttttttagtacagaataacaaattcatatggaagcatataagtctcataatagtcataaaaattatttctagaaaagctatagagatgggcaactt
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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