Basic Information
VIS ID
TVIS30000188
Fusion event
HIV-TGFBR3 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
p22.1
Reference genome
End
92340853/91875296 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/5517609; hsa-mir-11399/Downstream/1971536;
Nearest cancer related gene
TGFBR3(TSG, No orient, 0)
Upstream sequence
CAGCAAGAGAAGCACCTGCCAGGAGGAGCCACATGAAGCCCCACTGGAGGAGCTGGCAGCAGTGAGAGCCTGGAAGAGTAAGCAGGAACCCCCATAGAGA
Downstream sequence
AGGAGGGACATGGGAAATACAGAAGGTGACACTGTGGAGGCTGTGGACCACAGAGAAGTAATATGGTGGCTTTTGGACTGTAACAGAAAAATCTACAGAA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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