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TVIS30000188
Basic Information
VIS ID
TVIS30000188
Fusion event
HIV-TGFBR3 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
92340853/91875296 (Hg38)
End
92340853/91875296 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1D
Target gene
TGFBR3
miRNAs that regulate target gene
hsa-mir-21-5p
;
hsa-mir-193b-3p
;
hsa-mir-181a-5p
;
hsa-mir-101-3p
;
hsa-mir-6817-3p
;
hsa-mir-6873-3p
;
hsa-mir-7110-3p
;
hsa-mir-541-5p
;
hsa-mir-136-3p
;
hsa-mir-382-3p
;
hsa-mir-218-5p
;
hsa-mir-513a-5p
;
hsa-mir-369-5p
;
hsa-mir-186-5p
;
hsa-mir-3681-3p
;
hsa-mir-27b-3p
;
hsa-mir-216a-3p
;
hsa-mir-27a-3p
;
hsa-mir-128-3p
;
hsa-mir-582-5p
;
hsa-mir-202-3p
;
hsa-mir-6715a-3p
;
hsa-mir-144-3p
;
hsa-let-7a-5p
;
hsa-let-7c-5p
;
hsa-mir-98-5p
;
hsa-mir-4500
;
hsa-let-7d-5p
;
hsa-let-7f-5p
;
hsa-let-7g-5p
;
hsa-let-7i-5p
;
hsa-mir-4458
;
hsa-let-7e-5p
;
hsa-let-7b-5p
;
hsa-mir-196a-5p
;
hsa-mir-196b-5p
;
hsa-mir-4638-3p
;
hsa-mir-3690
;
hsa-mir-7157-5p
;
hsa-mir-4310
;
hsa-mir-548x-3p
;
hsa-mir-548j-3p
;
hsa-mir-548aq-3p
;
hsa-mir-548aj-3p
;
hsa-mir-548am-3p
;
hsa-mir-548ah-3p
;
hsa-mir-548ae-3p
;
hsa-mir-330-3p
;
hsa-mir-497-5p
;
hsa-mir-195-5p
;
hsa-mir-6838-5p
;
hsa-mir-15b-5p
;
hsa-mir-16-5p
;
hsa-mir-15a-5p
;
hsa-mir-424-5p
;
hsa-mir-103a-3p
;
hsa-mir-107
;
hsa-mir-1238-3p
;
hsa-mir-670-3p
;
hsa-mir-4753-3p
;
hsa-mir-6881-3p
;
hsa-mir-6780a-3p
;
hsa-mir-7111-3p
;
hsa-mir-130b-5p
;
hsa-mir-6769b-3p
;
hsa-mir-4723-3p
;
hsa-mir-3183
Nearest miRNA
hsa-mir-101-1/Upstream/5517609; hsa-mir-11399/Downstream/1971536;
Nearest TSS
ENST00000473358/Upstream/13250;
ENST00000461218/Downstream/10636;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/328197
,
chr1-CpG: 123/Downstream/10060
Nearest cancer related gene
TGFBR3
(TSG, No orient, 0)
Upstream sequence
CAGCAAGAGAAGCACCTGCCAGGAGGAGCCACATGAAGCCCCACTGGAGGAGCTGGCAGCAGTGAGAGCCTGGAAGAGTAAGCAGGAACCCCCATAGAGA
Downstream sequence
AGGAGGGACATGGGAAATACAGAAGGTGACACTGTGGAGGCTGTGGACCACAGAGAAGTAATATGGTGGCTTTTGGACTGTAACAGAAAAATCTACAGAA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Sample Information
×
Sample name
1A5
Sample type
PBMC
Age
36
Gender
Male
CpG Island Information
×
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