Basic Information
VIS ID
TVIS30000191
Fusion event
HIV-chr10 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
6116641/6074678 (Hg38)
End
6116641/6074678 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/2083419; hsa-mir-107/Downstream/77518;
Nearest TSS
ENST00000439456/Upstream/12308; ENST00000467214/Downstream/14309;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/96507, chr10-CpG: 89/Downstream/14351
Nearby gene
IL2RA(-3559) ;
Upstream sequence
attggatggagccgggatacagtgatggaacaaaccatgtctctgtttgggggaagagcgtcgctgaggaggaaagactcgatgtcccaggaacagcaag
Downstream sequence
caggctggcgtgactgcatgagccaggggcccaggtcagagatgcaggtggaaaaagtaggtaggggctgcgtcagtgaaggacttgtaggccaggtgag
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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