Basic Information
VIS ID
TVIS30000196
Fusion event
HIV-chr13 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
50199573/49625437 (Hg38)
End
50199573/49625437 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/5429237; hsa-mir-1267/Downstream/370978;
Nearest TSS
ENST00000623511/Upstream/39854; ENST00000490932/Downstream/2862;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/39467, chr13-CpG: 63/Downstream/65651
Nearby gene
MLNR(+115761) ;
Upstream sequence
CAGAACTGGGGTCACAAAGTAATCATGGTTTCCCAGCGAACACAAGACTTTGGCCCTCAGGCAAGGCTCCTTGATGTCTGGGGGAGCCTGTGCCCCCCAG
Downstream sequence
CAGTGCTCACAGATCCACCCCTGACTGCCAGCCGGCCCCTTGATGGCGGTGCCTGTCTCAGATTCTGTGGTCAGTGCCACGCAGCTACCTCCAGAGGCAG
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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