Basic Information
VIS ID
TVIS30000207
Fusion event
HIV-chr17 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
71111888/73115749 (Hg38)
End
71111888/73115749 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/4016093; hsa-mir-1250/Downstream/1632864;
Nearest TSS
ENST00000595228/Upstream/23037; ENST00000579323/Downstream/49263;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/474934, chr17-CpG: 113/Downstream/49034
Nearby gene
SLC39A11(-201266) ;
Nearest cancer related gene
SLC39A11(TSG, -201266) ;
Upstream sequence
GCTGGCAGGAGACCTAGTGGGTCTAGTGGGTGCTCACCCTGAGATGATCTCCTCTCCCTAATGCTTATTCATTCTCTTCTCTTGAAGAGGCTTCCCATCT
Downstream sequence
TTGAGCCTTTGCTGGGCAGGATTTTGGTTACTGTGCTGAAATAGCGAGGGGGACTGGTGGAGTGAGGGCAAGATCCTTACAGGATGTGAAGGATGTGGGT
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate