Basic Information
VIS ID
TVIS30000221
Fusion event
HIV-chr3 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
171273191/171555401 (Hg38)
End
171273191/171555401 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/448642; hsa-mir-1224/Downstream/3814139;
Nearest TSS
ENST00000440867/Upstream/87317; ENST00000619900/Downstream/46937;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/94226, chr3-CpG: 84/Downstream/254426
Nearby gene
PLD1(-5337) ;
Upstream sequence
ATACATAACACAATCCTTACGGGAAGGAAGGGCCAAGGGAAGGCAGGGCCGCCTGTCAGCTCCTTAGATGGTCTTCCCATTCCTCAGAATGAGGGCCACT
Downstream sequence
ACTACTCCTACCCCATAGTTTGAGTTGCCAAATTTGACTAAGGCAGAAAGCCCATGTGCCTGACTCCTGAGGATCACCTGCTACCCAACTGGCTCTTTGG
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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