Basic Information
VIS ID
TVIS30000225
Fusion event
HIV-LINC01340 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
96920011/97584307 (Hg38)
End
96920011/97584307 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA5B
Target gene
LINC01340
Nearest miRNA
hsa-mir-10397/Upstream/1505095; hsa-mir-103a-1/Downstream/3232175;
Nearest TSS
ENST00000502646/Upstream/79611; ENST00000502324/Downstream/297113;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/400366, chr5-CpG: 135/Downstream/1184567
Upstream sequence
TATTTCTGGAAGCTGAACATTTTAATGACAAATTTCCAGTAAGCATAAGTATCAAAAAGAAAAAAAAAATGGAGAATGTGTGCTGTTTCTTGCTACAACT
Downstream sequence
ACTGTATTTCTGGTTGAAGGTAGAACTCACCCCCAAAATGCAATTTGCTTTCTTTGCCAGGATAAACCTTCATTAAAGCCAAAATTCAGTTTAAATTAAA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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