Basic Information
VIS ID
TVIS30000228
Fusion event
HIV-LOC101928277 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr6
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
135016478/134695340 (Hg38)
End
135016478/134695340 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928277
Nearest miRNA
hsa-mir-10398/Upstream/2580077; hsa-mir-1202/Downstream/283998;
Nearest TSS
ENST00000381078/Upstream/35504; ENST00000416448/Downstream/12009;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/377457, chr6-CpG: 35/Downstream/359271
Nearby gene
LOC101928304(-101928304) ;
Upstream sequence
tttagtagcttcatactttgaactcttatatttaagtctttaatccatttggatttgatttttgtaaatatgagagatagggggctagttttattcttct
Downstream sequence
tcatatgaatatccagttttcccagcaccatgtattgaagagactgttcttttcctaatgtgtgttctctttgtcaaaaatgtgttcatagatgtgaatt
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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