Basic Information
VIS ID
TVIS30000233
Fusion event
HIV-chr9 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
122928892/120166614 (Hg38)
End
122928892/120166614 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/5957085; hsa-mir-12126/Downstream/78365;
Nearest TSS
ENST00000422679/Upstream/193520; ENST00000437707/Downstream/223663;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/796678, chr9-CpG: 40/Downstream/328145
Nearby gene
MIR147A(-406939) ;
Upstream sequence
TCATCCGTGTTCCTAATTTGTTGCAGCATGGAACACTTCAGGTTCTTGCCACATACTGACCTAAACCAATAAATGGATAAATGTTTATCCCCAGCCATTT
Downstream sequence
CAAGGAAATTGCAGGCTTCTTGGTTATTGGGACCAAAGATCTCTTTGGTCACACCCtgtgaccttggccaagtcaccctgcatctctgagccttggtttt
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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