Basic Information
VIS ID
TVIS30000234
Fusion event
HIV-GARNL3 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
130014126/127251847 (Hg38)
End
130014126/127251847 (Hg38)
Orient
+
Location type
Intronic
Target gene
GARNL3
miRNAs that regulate target gene
hsa-mir-92a-3p
Nearest miRNA
hsa-let-7a-1/Upstream/2558049; hsa-mir-12126/Downstream/438840;
Nearest TSS
ENST00000422679/Upstream/6510; ENST00000487565/Downstream/11815;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/6438, chr9-CpG: 22/Downstream/144648
Nearby gene
GARNL3(+84253) ;
Upstream sequence
tatgccaccccaagatacaccactttggcaaaaggattattttgagcagaaggcagttgaaaaaaagcagacacaggaagaactctctgccctttttcta
Downstream sequence
tctgcctaaaagcagggcataaatttccccttgtgaggatgccccctccccttaactgcaccaagaggagaacaacacttatcatcagagatggagatag
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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