Basic Information
VIS ID
TVIS30000235
Fusion event
HIV-SH3KBP1 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
p22.12
Reference genome
GRCh37/hg19
Start
19717791/19699673 (Hg38)
End
19717791/19699673 (Hg38)
Orient
+
Location type
Intronic
Target gene
SH3KBP1
miRNAs that regulate target gene
hsa-mir-1914-5p ; hsa-mir-5692a ; hsa-mir-218-5p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-4775 ; hsa-mir-590-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-335-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-3690-1/Upstream/2273719; hsa-let-7f-2/Downstream/317415;
Nearest TSS
ENST00000429181/Upstream/3972; ENST00000424026/Downstream/41164;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/184030, chrX-CpG: 157/Downstream/187236
Upstream sequence
cagagctgggagcagagcagcttacacctggtagcgtttgagaacgatggaataaaaccacttcaacagtttctatctgagggccttgcaattttcatgt
Downstream sequence
ctttacaatcaacagcatctaagtgggttcagggtccaaggaagTAGTTTTTAAATCTTAACCCTGTTGGAGATTGGGCAAACACCTGGGTGAACTTCAA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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