Basic Information
VIS ID
TVIS30000236
Fusion event
HIV-chrX integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chrX
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
70308247/71088397 (Hg38)
End
70308247/71088397 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1065474; hsa-mir-105-1/Downstream/3129980;
Nearest TSS
ENST00000429181/Upstream/14971; ENST00000466874/Downstream/7800;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/34992, chrX-CpG: 24/Downstream/7249
Nearby gene
ZNF200(+4303) ;
Upstream sequence
aacctccacctcccaggttcaagcaattctcgtgtctcagccacccgcatagctgggactacaggcatgcacgatcacgcctggctaatgttttctgttt
Downstream sequence
ttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctggcctcaagtgatccacccacctcggcctcccgaagtgttaggattacag
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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