Basic Information
VIS ID
TVIS30000243
Fusion event
HIV-LOC105370201 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
49141970/48567834 (Hg38)
End
49141970/48567834 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370201
Nearest miRNA
hsa-mir-2276/Upstream/4371634; hsa-mir-1267/Downstream/1428581;
Nearest TSS
ENST00000623511/Upstream/34578; ENST00000617562/Downstream/5483;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/34507, chr13-CpG: 132/Downstream/407852
Nearby gene
ATG12(-100129597) ;
Upstream sequence
TGCTTACTGTTTGAAGTCTTGAGACTAGGAGACTCATATTTCTGCTACCAGATAATTAAGATACAGCATCTTAATTATCCTTCTATCATCATGCAGATCA
Downstream sequence
ATGGTGTGCCATGTAAAATTTTTCTGAACTTAGCATTTTCACTGCTTCCAAAGGGCTGCACTATTTCATAAAAAGAAAACTGTGTTTCATAACAAAACGT
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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