Basic Information
VIS ID
TVIS30000244
Fusion event
HIV-LOC105378178 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
49730624/49263906 (Hg38)
End
49730624/49263906 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105378178
Nearest miRNA
hsa-mir-208a/Upstream/1502802; hsa-mir-1185-1/Downstream/702493;
Nearest TSS
ENST00000550708/Upstream/186401; ENST00000557531/Downstream/322419;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1587520, chr14-CpG: 30/Downstream/322026
Nearby gene
RPS29(-6235) ;
Upstream sequence
ACTAGTACAGATGCAGCAAAGGCAAAAACAGTAGGATCTGTTGAATAAATTTGAAGTGTCCCAATAGGGATTTCACATTTTTAGGGGAAAGTAGAGACGA
Downstream sequence
TGAAATAGATATTGCAAATAACTATCTTTTTTTAAATCTAAGCAATGGGGTGGGTGAGGACAGTATTTATTATCAAATGCCAAAACCATTCCTGCAAGGC
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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