Basic Information
VIS ID
TVIS30000245
Fusion event
HIV-chr16 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31190255/31178934 (Hg38)
End
31190255/31178934 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/284949; hsa-mir-11401/Downstream/2984644;
Nearest TSS
ENST00000527434/Upstream/28840; ENST00000487045/Downstream/1176;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/30246, chr16-CpG: 139/Downstream/565
Nearby gene
AP3S1(+2521) ;
Upstream sequence
GGCGGGCCCAGGGCATGGCCCTCATTGTTTCTCTAGAAAGACGTGTCCAACCCTCAAAGGACCTTCTGAAATCCCGCTGAAAGGTTAAGTTGGGAAGGAA
Downstream sequence
AACCTGCATGCCTATGTATCAGGAATTAACGTCTTTTGTCTTGTTTTATTCAGTAGTTTCAAATTGCCTTCTCCAGGCAAGGCTGATGAAAGTGCAAGTT
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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