Basic Information
VIS ID
TVIS30000246
Fusion event
HIV-SLC13A5 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
6588877/6685558 (Hg38)
End
6588877/6685558 (Hg38)
Orient
+
Location type
UTR3
Target gene
SLC13A5
Nearest miRNA
hsa-mir-1253/Upstream/30049; hsa-mir-10226/Downstream/332057;
Nearest TSS
ENST00000595228/Upstream/30549; ENST00000575267/Downstream/4562;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/28074, chr17-CpG: 92/Downstream/27545
Upstream sequence
TTGAAGGAGGCTCACTGGAGAGGTGGGACAGGGGGCCAGTCGATTAAAACAGAACCAAGTGATGAAGGGCGTAGGTTGGCCTGTGGTGCACTGTGGGTGG
Downstream sequence
CAAGCCAGGTGTCGTCCTGAAGTTGGCAACTCAGATTCCTCATCCTTTGGTGGTGGCCACAGGAGGAGTTCCCAGAGGCTTCAGGAGGCTCTGATTCCCA
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
Curate