Basic Information
VIS ID
TVIS30000247
Fusion event
HIV-DNAH2 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7683970/7780652 (Hg38)
End
7683970/7780652 (Hg38)
Orient
+
Location type
Exonic
Target gene
DNAH2
Nearest miRNA
hsa-mir-1253/Upstream/557273; hsa-mir-10226/Downstream/307404;
Nearest TSS
ENST00000595228/Upstream/19908; ENST00000575105/Downstream/23668;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/12567, chr17-CpG: 23/Downstream/6175
Upstream sequence
GTCTCTGACTGTCCTGAGATGAAGCAGAGGGATTTGTGGGGAGATGGACTGTTTCCTCCTCTGTTTTGGTTCCCCAGATTCTGGCCAAGAAGGTGTACAC
Downstream sequence
ACTCTACTCACTGGCTGTGCAGCAGCTGTCCAGACAGGACCACTATGACTTTGGCCTGCGTGCCCTCACCTCCCTTCTGCGCTATGCTGGCAAGAAGCGC
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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