VISDB Viral Integration Site DataBase

VIS ID

TVIS30000250

Fusion event

HIV-NFIX integration

Validated

No

Detection method

NG-SGS

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr19

Cytoband

p13.13

Reference genome

Start

End

13196940/13086126 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-223-3p ; hsa-mir-124-3p ; hsa-mir-324-5p ; hsa-mir-149-5p ; hsa-mir-506-3p ; hsa-mir-765 ; hsa-mir-4459 ; hsa-mir-5582-5p ; hsa-mir-6748-5p ; hsa-mir-6742-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-92a-2-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-6789-3p ; hsa-mir-149-3p ; hsa-mir-6804-5p ; hsa-mir-7150 ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-212-5p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-3144-5p ; hsa-mir-6781-5p ; hsa-mir-744-5p ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-3648 ; hsa-mir-6869-3p ; hsa-mir-6846-3p ; hsa-mir-4734 ; hsa-mir-6752-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-6825-5p ; hsa-mir-3184-5p ; hsa-mir-423-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6845-3p ; hsa-mir-1199-5p ; hsa-mir-1275 ; hsa-mir-139-3p ; hsa-mir-24-1-5p ; hsa-mir-24-2-5p ; hsa-mir-25-5p ; hsa-mir-3064-5p ; hsa-mir-3141 ; hsa-mir-3202 ; hsa-mir-4294 ; hsa-mir-4303 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4525 ; hsa-mir-4665-5p ; hsa-mir-4722-5p ; hsa-mir-4747-5p ; hsa-mir-483-5p ; hsa-mir-5001-5p ; hsa-mir-5010-5p ; hsa-mir-516b-5p ; hsa-mir-5196-5p ; hsa-mir-541-3p ; hsa-mir-5580-5p ; hsa-mir-604 ; hsa-mir-625-5p ; hsa-mir-647 ; hsa-mir-6504-5p ; hsa-mir-6515-5p ; hsa-mir-654-5p ; hsa-mir-6746-5p ; hsa-mir-6751-3p ; hsa-mir-6758-5p ; hsa-mir-6762-3p ; hsa-mir-6807-5p ; hsa-mir-6856-5p ; hsa-mir-6882-3p ; hsa-mir-762 ; hsa-mir-941 ; hsa-mir-9500 ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-1179 ; hsa-mir-1288-3p ; hsa-mir-155-3p ; hsa-mir-1914-3p ; hsa-mir-296-5p ; hsa-mir-3169 ; hsa-mir-3685 ; hsa-mir-384 ; hsa-mir-3918 ; hsa-mir-4685-5p ; hsa-mir-4788 ; hsa-mir-4797-5p ; hsa-mir-5194 ; hsa-mir-6089 ; hsa-mir-615-5p ; hsa-mir-6738-5p ; hsa-mir-6761-3p ; hsa-mir-6837-5p ; hsa-mir-6840-3p ; hsa-mir-7113-5p ; hsa-mir-7160-3p ; hsa-mir-874-5p

Nearest miRNA

hsa-mir-10395/Upstream/145586; hsa-let-7e/Downstream/750161;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/60771, chr19-CpG: 26/Downstream/1759

Upstream sequence

TGGTCCCCACAGAGGGGACAGCGTTTTTTGAGCAGGTCTTGAAGGGTGTgggaaatagtctttcatacagagagcttcgcagcaagccagcgtgcagtcc

Downstream sequence

tgcctgctcggcctgtgttccggaaaccccagtcagtttggaatgggaagtgcagaggggcggtaggggctggaccagtagaggcatccgtgggggcctt