Basic Information
VIS ID
TVIS30000257
Fusion event
HIV-chr4 integration
Validated
No
Detection method
NG-SGS
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30024859
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
q31.23
Reference genome
GRCh37/hg19
Start
150763649/149842497 (Hg38)
End
150763649/149842497 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2059829; hsa-mir-1305/Downstream/2646830;
Nearest TSS
ENST00000502981/Upstream/26638; ENST00000505586/Downstream/53736;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1396593, chr4-CpG: 161/Downstream/235601
Nearby gene
DCLK2(+166614) ;
Upstream sequence
GTGCTATCATACCTCATATGAACCTCATATGAATCTTTTGGGTTGGTTGTCTTTTTAAAAATCCACAGtgctgtggtttgaatatgtttcccaaagttta
Downstream sequence
tttattgaaaatttaattgccattataacagtattaagaggtagggcctttaagatgtgtttaggccataaggactctacccttgtgaagggattaatgc
Reference
Sharaf, R., et al.HIV-1 proviral landscapes distinguish posttreatment controllers from noncontrollers. J Clin Invest,2018,128(9): 4074-4085.
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